PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AS_A117C8692.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HB-other
Protein Properties Length: 233aa    MW: 26576.4 Da    PI: 10.3694
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AS_A117C8692.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox46.85.2e-153587557
                           SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
               Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                           t+ ++ q++ Le+++ + +yp+ e+ +e A+++gLt +qV++WF+ rR ke++
  Traes_2AS_A117C8692.2 35 TKKSPLQIQMLESFYSEVQYPKPEDVTEYAASVGLTYNQVRIWFKERRRKERR 87
                           566899*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007114.3982888IPR001356Homeobox domain
SMARTSM003898.2E-143092IPR001356Homeobox domain
SuperFamilySSF466898.55E-153095IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-153597IPR009057Homeodomain-like
CDDcd000861.04E-83578No hitNo description
PfamPF000462.3E-123687IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MVFTVTCLLC ALIPNYGFLQ MMAKGFLAKS DNAGTKKSPL QIQMLESFYS EVQYPKPEDV  60
TEYAASVGLT YNQVRIWFKE RRRKERRHME AAEVHMETQA SARSNWPRCS SSRSSNSSQS  120
PMQDTTGHQS YQDQSVLKKR KIMSPTAQRS TLPFENNDPV RKHGKGKGLM TVWHAMYSQT  180
AEIQDCSSFI DESGCLRSLR PFEDCGGKLA QRQTLPRKKV NKKSRPPPSK RKV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3739810.0AK373981.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3049P02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187489.11e-147homeobox-DDT domain protein RLT3-like
TrEMBLA0A446KNL21e-164A0A446KNL2_TRITD; Uncharacterized protein
STRINGTraes_2AS_A117C8692.21e-177(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45563350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12750.13e-09Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]