PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2AS_DBA88CF6F.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 175aa MW: 19654.3 Da PI: 9.6998

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2AS_DBA88CF6F.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.9	0.00071	54	76	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Traes_2AS_DBA88CF6F.2 54 FSCNYCLRKFFSSQALGGHQNAH 76 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.56E-6	50	81	No hit	No description
PROSITE profile	PS50157	10.45	54	81	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	56	76	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MKRAPEAEEQ KLASQGDEAG RADNSTPTPW LKLGLDALRS EEAKPPEATP QRTFSCNYCL 60 RKFFSSQALG GHQNAHKKER CAARRSRSFQ QLMIRFPPAA SFIQPMRASP HSTILTAQGE 120 RAAVVVARFH DGQMRNRMPF AVEEAAYFVW PGSFKASLQE PMKQPEENID LSLHL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020146214.1	1e-119	zinc finger protein 7-like
TrEMBL	M7ZG86	1e-127	M7ZG86_TRIUA; Zinc finger protein 7
STRING	TRIUR3_23907-P1	1e-127	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1487	3	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G24625.1	1e-22	zinc finger protein 7