PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AS_E17243D52.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 211aa    MW: 22766.1 Da    PI: 9.3436
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AS_E17243D52.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS29.11.2e-09170211243
                   GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaa 43 
                            ++lL++cA+a++++d++l+q++L+ l+++a  dgd++qRl+a
  Traes_2AS_E17243D52.1 170 EQLLVHCANAIEANDATLTQQILWVLNNIAPADGDSNQRLTA 211
                            79*************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509858.979143211IPR005202Transcription factor GRAS
PfamPF035144.2E-7170211IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
NIPCTYVLDE SIKLSPFSVS LGFPFDTRSQ SSIGIGKARV CSCRLYLRFG RASARPSIYA  60
LYKHQIRSSN CWTCTSSASL LFSNHRRSAA NLLPSIPPTS RPPYMMQFTH AAVTAPPLYP  120
NGHHGLGLGL FLDVGAPRAR PWPAAGSLFP TLPPSSKISL GNLNSAGCME QLLVHCANAI  180
EANDATLTQQ ILWVLNNIAP ADGDSNQRLT A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3627400.0AK362740.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2009M24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165039.14e-70scarecrow-like protein 32
TrEMBLA0A3B6C3303e-71A0A3B6C330_WHEAT; Uncharacterized protein
TrEMBLA0A446M2X23e-71A0A446M2X2_TRITD; Uncharacterized protein
STRINGTraes_2AS_E17243D52.11e-153(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56973759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.12e-18GRAS family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]