PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AS_E6DE173BA.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HRT-like
Protein Properties Length: 527aa    MW: 57375.5 Da    PI: 9.8145
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AS_E6DE173BA.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like55.31.1e-17281311131
               HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                            +CGv+ledGs C + P +gRKRCe HKG+R+
  Traes_2AS_E6DE173BA.1 281 VCGVMLEDGSSCLEDPLEGRKRCELHKGRRV 311
                            7*****************************7 PP
2HRT-like28.52.6e-09442468128
               HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKG 28 
                            iCG+ +++G  Ck  Pv gR RCeeH G
  Traes_2AS_E6DE173BA.1 442 ICGAVTDNG-YCKLAPVAGRERCEEHRG 468
                            8*******9.6***************98 PP
3HRT-like52.39.2e-17488517130
               HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 
                            +CG++ +dGs+Ck+qP+ gRKRC+ HKG+R
  Traes_2AS_E6DE173BA.1 488 VCGARASDGSPCKNQPIAGRKRCALHKGQR 517
                            7****************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004654.6E-548154IPR000305GIY-YIG nuclease superfamily
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
FAPEFSSQVL VGXXXXXAGK EGVQRYHTRN LPDNFPGLYE LGVARPSYDG VRARRNRSVV  60
VVVVYLGQAD NVRARLQQYG RTGSHLDAGN PLATVGKAEV NTFTAGPGLF REVFSRGYSV  120
MFRCALMGSK KAAEKTEAQL LGVFDYAWNK LQNGACRREE ILLKLEQGSH RLSLLGRVRH  180
LKQRVFGEKA GIKINSTGSV EISSGSMKNM LPRVRTFVGF RPRLVNSGDD LNEAIDIHRK  240
CTPQANTAGN KQAHRRSEGY KVKKVDVIER RTAPIREAEA VCGVMLEDGS SCLEDPLEGR  300
KRCELHKGRR VRVAYSHKVS SSSSTCPVAI PTVESIPQQT ANPSKPDQAW QTSADQSKNL  360
STNAKEPSLQ RSSLEAKEMK IGEAPTEDEA YGTSHAESQF HQDEPVGRKW FELLKAQKSA  420
SAPSLRGQGC QTREANDNAS AICGAVTDNG YCKLAPVAGR ERCEEHRGIE VTGASSAPCS  480
GRSGWPSVCG ARASDGSPCK NQPIAGRKRC ALHKGQRACC ASTPSVK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2520400.0AK252040.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf148d05, mRNA sequence.
GenBankAK3627340.0AK362734.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2009M06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020159698.10.0protein EFFECTOR OF TRANSCRIPTION 2-like
TrEMBLA0A3B6AWJ60.0A0A3B6AWJ6_WHEAT; Uncharacterized protein
STRINGTraes_2AS_E6DE173BA.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79483443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.11e-46effector of transcription2
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]