PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AS_E9A1F35CB.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 258aa    MW: 28041.8 Da    PI: 8.9376
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AS_E9A1F35CB.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.00014231252323
                            ETTTTEEESSHHHHHHHHHH.T CS
                zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                            Cp+C+k F ++ +L+ H  + H
  Traes_2AS_E9A1F35CB.1 231 CPKCSKGFQDPVLLVEHVEReH 252
                            *****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1110.103.0E-962122IPR000058Zinc finger, AN1-type
SuperFamilySSF1183101.51E-964117No hitNo description
PfamPF014283.6E-872111IPR000058Zinc finger, AN1-type
SMARTSM003550.8192215IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280194215IPR007087Zinc finger, C2H2
SMARTSM0035512229252IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.683229257IPR007087Zinc finger, C2H2
PROSITE patternPS000280231252IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MIVQVFCLQH RSHTSHKCPK ANNKDVTVVV CPLCAKGVRL NPNEDANITW ESHVNTDCDP  60
SNYQRATKKK KCPVPGCREQ LTFSNTIMCK DCSKEHCLKH RFGPDHKCPG PRKPEPTFPF  120
ANMLRRSQKV EPRANSSGSG SSWWSSSLLN AASSFRSSAE AGMQKLSIAT SEAVQKAKDG  180
VTPSSSGGGL VEQCVQCPAR FSTVGALIEH AEKSHGNNSQ PSRGKVTIDA CPKCSKGFQD  240
PVLLVEHVER EHGGTSKA
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2513470.0AK251347.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf113d20, mRNA sequence.
GenBankAK3609830.0AK360983.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1130A19.
GenBankAK3671740.0AK367174.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2052H13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020157729.10.0zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like
SwissprotQ0D5B91e-135SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLA0A446KU130.0A0A446KU13_TRITD; Uncharacterized protein
STRINGTraes_2AS_E9A1F35CB.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47633342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.13e-96C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]