PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AS_EC0A70BB3.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 96aa    MW: 9743.98 Da    PI: 7.5811
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AS_EC0A70BB3.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.000531537123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           ++C+ C+++F++   L  H r+H
  Traes_2AS_EC0A70BB3.1 15 HQCSLCHRTFPSGQALGGHKRLH 37
                           79*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.09E-61239No hitNo description
PfamPF139122.2E-121439IPR007087Zinc finger, C2H2
PROSITE profilePS501579.5561537IPR007087Zinc finger, C2H2
PROSITE patternPS0002801737IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
GDEASGGAPV EAKVHQCSLC HRTFPSGQAL GGHKRLHYEG GAAGAGTGKD KEAAKAKAAA  60
LLRDFDLNLP ASGVAGDEAE SPPPEAKRAR LMLLAI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153235.11e-50zinc finger protein AZF1-like
TrEMBLA0A3B6AW611e-59A0A3B6AW61_WHEAT; Uncharacterized protein
TrEMBLA0A446KTM41e-59A0A446KTM4_TRITD; Uncharacterized protein
STRINGTraes_2AS_EC0A70BB3.16e-62(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100282335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.12e-12salt tolerance zinc finger
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]