PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_02479C76A.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 145aa    MW: 16788.9 Da    PI: 9.5664
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_02479C76A.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.41e-173451456
                           HHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox 14 eLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                           +Le+ F+++++++ ++++ LA++lgL  rqV vWFqNrRa+ k
  Traes_2BL_02479C76A.1  3 VLEDSFREHPTLNPRQKAALAQQLGLRSRQVEVWFQNRRARTK 45
                           7****************************************98 PP
2HD-ZIP_I/II114.37.5e-372801291
            HD-ZIP_I/II 12 klLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
                           ++LE+sF+e+ +L+p++K++la++Lgl+ rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
  Traes_2BL_02479C76A.1  2 AVLEDSFREHPTLNPRQKAALAQQLGLRSRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQKEVQELR-AL 80
                           68**************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.597147IPR001356Homeobox domain
SMARTSM003899.5E-7151IPR001356Homeobox domain
SuperFamilySSF466891.97E-15255IPR009057Homeodomain-like
CDDcd000863.77E-11248No hitNo description
PfamPF000464.9E-15345IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-16345IPR009057Homeodomain-like
PRINTSPR000312.1E-61827IPR000047Helix-turn-helix motif
PROSITE patternPS0002702245IPR017970Homeobox, conserved site
PRINTSPR000312.1E-62743IPR000047Helix-turn-helix motif
PfamPF021839.8E-124781IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.4E-244790IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
SAVLEDSFRE HPTLNPRQKA ALAQQLGLRS RQVEVWFQNR RARTKLKQTE VDCEFLKRCC  60
ETLTEENRRL QKEVQELRAL KLVSPHQYMH MSPPTTLTMC PSCERVSNNN NNNNNNNNNN  120
NTADRRNGVE GAICHRPIAV RPQHS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13947RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9749801e-136EU974980.1 Zea mays clone 462177 homeobox-leucine zipper protein ATHB-4 mRNA, complete cds.
GenBankKJ7283621e-136KJ728362.1 Zea mays clone pUT6644 HB transcription factor (HB53) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164579.18e-86homeobox-leucine zipper protein HOX17-like
SwissprotQ0JB928e-76HOX17_ORYSJ; Homeobox-leucine zipper protein HOX17
TrEMBLA0A3B6CBD31e-102A0A3B6CBD3_WHEAT; Uncharacterized protein
STRINGTraes_2BL_02479C76A.11e-103(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25873889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.11e-61homeobox protein 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]