PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_0978E2D14.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family SBP
Protein Properties Length: 226aa    MW: 24293.8 Da    PI: 7.4243
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_0978E2D14.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP71.12.1e-22178226148
                            --SSTT-----TT--HHHHHTT--HHHHT-S-EE.ETTEEEEE-TTTSS CS
                    SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvl.vsgleqrfCqqCsr 48 
                            +Cq+egC+adls ak+yhrrhkvCe+hskapvv+ + gl+qrfCqqCsr
  Traes_2BL_0978E2D14.1 178 RCQAEGCKADLSGAKRYHRRHKVCEHHSKAPVVVtAGGLHQRFCQQCSR 226
                            6******************************98725689*********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.1E-23173226IPR004333Transcription factor, SBP-box
PROSITE profilePS5114118.768176226IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.22E-20176226IPR004333Transcription factor, SBP-box
PfamPF031106.2E-17179226IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MMNLPAAAGN SCDEFGYGAP DPPPPSLFPI MDHQEGGGGI HREHDHHHHH HLGGYSLEPS  60
SLALLPPSSH ATIAAHSPHD ILQFYHHPTS HHYLAAAAAG GNGSPYGQFG GGGSAGGFQS  120
YYHQQVGTGA PEYYFPTLVS SAEENMASFA ATQLGLNLGY RTYFPPRGGY TYGHHPPRCQ  180
AEGCKADLSG AKRYHRRHKV CEHHSKAPVV VTAGGLHQRF CQQCSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj0_A6e-15179226652squamosa promoter-binding protein-like 12
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that plays an important role in building the laminar joint between leaf blade and leaf sheath boundary, thereby controlling ligule and auricle development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4478830.0KF447883.1 Triticum aestivum squamosa promoter-binding-like protein 8 (SPL8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020192131.11e-128squamosa promoter-binding-like protein 8
SwissprotQ01KM75e-97SPL8_ORYSI; Squamosa promoter-binding-like protein 8
TrEMBLA0A3B6CEG91e-163A0A3B6CEG9_WHEAT; Uncharacterized protein
STRINGTraes_2BL_0978E2D14.11e-163(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69903452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.23e-26squamosa promoter binding protein-like 8
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]