PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_0C45635DD1.4
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Trihelix
Protein Properties Length: 416aa    MW: 44931.1 Da    PI: 6.5847
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_0C45635DD1.4genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix401e-1275156286
                trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                             W++  + aLi+a  e+  +l+rg+l+ p+W+ev++++       +  +s +qCk++++ l+k+yk +++   +       +++++d+
  Traes_2BL_0C45635DD1.4  75 WSEGATSALIDAWGERFVALGRGSLRHPQWQEVAEAVssrdNYSKAPKSDVQCKNRIDTLKKKYKIERAKPVS-------SWQFYDR 154
                             *************************************84444445566889**************99887765.......5899988 PP

                trihelix  85 le 86 
                             l+
  Traes_2BL_0C45635DD1.4 155 LD 156
                             86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.6E-2273157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MDDDDNSPSP SLSPASSSPL PVASALPVAD PVTVASAPPG GPLTLALPIQ KHGSYPSHGG  60
SGGGGGGGGG REDAWSEGAT SALIDAWGER FVALGRGSLR HPQWQEVAEA VSSRDNYSKA  120
PKSDVQCKNR IDTLKKKYKI ERAKPVSSWQ FYDRLDVLLA PTYNQKPAAH PNGRNAVPTA  180
LRAGFPQRSR TPLMPASAPV KRRAPSPELS ASSESSDGFP PEPALQAANG KRRRTDEGRV  240
DGFSGGDRSQ GMRELAQAIR RLGEAYERVE TAKLEQAAEM ERQRLDFARE LESQRVQFFL  300
NTQKELSQGK SHISPAAAAS HSQVGAATVG GSSRRMASVP DSTSRRMAPF PDARTSSNHH  360
DRYRASDGSR HHHRPALRPH YQYHENNMAD SAAASDGEQS DEEEEEEDDD NEEESQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3568320.0AK356832.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1040K01.
GenBankAK3649150.0AK364915.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2029F22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020197552.10.0trihelix transcription factor ASIL2-like
SwissprotQ9LJG81e-37ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A3B6CA790.0A0A3B6CA79_WHEAT; Uncharacterized protein
TrEMBLA0A446MEA50.0A0A446MEA5_TRITD; Uncharacterized protein
STRINGTraes_2BL_0C45635DD1.40.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24043069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11100.15e-42sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]