PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_264CE0C2E.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 78aa    MW: 8242.74 Da    PI: 3.7578
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_264CE0C2E.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.82.4e-082267345
                           SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHH CS
        Myb_DNA-binding  3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwq 45
                            WT e ++ + +a +    +     W++Ia  +  g+t+++++ ++ 
  Traes_2BL_264CE0C2E.1 22 GWTREQEKAFENALATVDEEegeaMWDKIADAVE-GKTPEEVRRHYE 67
                           6*****************99**************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.6791570IPR017877Myb-like domain
SMARTSM007170.00121972IPR001005SANT/Myb domain
PfamPF002491.8E-62167IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-52275IPR009057Homeodomain-like
SuperFamilySSF466891.48E-112276IPR009057Homeodomain-like
CDDcd001671.46E-52370No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    Send to blast
MAAEEASSSG GGGGEEGSGA GGWTREQEKA FENALATVDE EEGEAMWDKI ADAVEGKTPE  60
EVRRHYELLV EDVDGIEA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3669323e-89AK366932.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2048J09.
GenBankAK3726193e-89AK372619.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3007D08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020192024.12e-31transcription factor SRM1-like
SwissprotF4JVB88e-15RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A3B6CIP83e-44A0A3B6CIP8_WHEAT; Uncharacterized protein
TrEMBLA0A446MX403e-44A0A446MX40_TRITD; Uncharacterized protein
STRINGTraes_2BL_264CE0C2E.11e-46(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-16RAD-like 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]