PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2BL_26A5F9082.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

S1Fa-like

Protein Properties

Length: 96aa MW: 10863 Da PI: 10.6163

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2BL_26A5F9082.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	132.3	1.2e-41	28	96	3	70
S1FA 3 vakvea.kGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 v ++e+ kGlnPG+ivllvv++ ll+f+vgny+ly yaqk+lPP+kkkPvskkklkreklkqGv++PGe Traes_2BL_26A5F9082.2 28 VIIEEVnKGLNPGMIVLLVVATTLLLFFVGNYALYLYAQKTLPPKKKKPVSKKKLKREKLKQGVSAPGE 96 5667778*************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD019013	4.0E-8	28	96	No hit	No description
Pfam	PF04689	7.1E-39	32	96	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 96 aa Download sequence Send to blast
MHLRLFCFHK SIYAIASDRS SLYLQNNVII EEVNKGLNPG MIVLLVVATT LLLFFVGNYA 60 LYLYAQKTLP PKKKKPVSKK KLKREKLKQG VSAPGE

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK363114	1e-124	AK363114.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2012N05.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020159184.1	3e-43	DNA-binding protein S1FA2
Refseq	XP_020159185.1	3e-43	DNA-binding protein S1FA2
Swissprot	Q7XLX6	7e-26	S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBL	A0A446MCN5	8e-63	A0A446MCN5_TRITD; Uncharacterized protein
STRING	Traes_2BL_26A5F9082.2	1e-63	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5154	35	63

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]