PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_3A3353970.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 249aa    MW: 26835.2 Da    PI: 7.2966
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_3A3353970.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2521.7e-1699149255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            ++ GVr ++ +g+++AeIrd + ng  +r++lg+fg++e Aa a+++a+ + +g
  Traes_2BL_3A3353970.1  99 DFIGVRTRP-WGKFAAEIRDSTRNG--ARVWLGTFGSPEAAAMAYDQAAFSARG 149
                            688***999.**********44465..**********************99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.57E-1398158No hitNo description
SMARTSM003808.2E-3099163IPR001471AP2/ERF domain
PROSITE profilePS5103220.36399157IPR001471AP2/ERF domain
PfamPF008471.0E-1199149IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-26100158IPR001471AP2/ERF domain
PRINTSPR003675.5E-7100111IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-20100159IPR016177DNA-binding domain
PRINTSPR003675.5E-7123139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MEQHFAVTSP PGSYYQHHRY AAAPSSDFDM SDMDDMAFLS TLLESTDRAS CSDPSLSSSS  60
SSSDMTGVGA AAPHVPVGSS SPKGRGHQAT AAMPIMAKDF IGVRTRPWGK FAAEIRDSTR  120
NGARVWLGTF GSPEAAAMAY DQAAFSARGD AAVLNFPVER VRESLRALAL GAVVGSPVLE  180
LKRRHRMRRR SPDKKPVKQP RVAAVKEDAR PATAGVVVLE DLGAEYLEEL LWVSEPPMDH  240
FHTTATSSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-2398159162ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A8e-2397158364ATERF1
3gcc_A8e-2397158364ATERF1
5wx9_A9e-231001591574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0341747e-59BT034174.1 Zea mays full-length cDNA clone ZM_BFc0032N13 mRNA, complete cds.
GenBankJX4699507e-59JX469950.1 Zea mays subsp. mays clone UT3211 AP2-EREBP-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149047.11e-126ethylene-responsive transcription factor 1B-like
SwissprotA0A3Q7I5Y96e-45ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A3B6CD270.0A0A3B6CD27_WHEAT; Uncharacterized protein
TrEMBLA0A446MQ670.0A0A446MQ67_TRITD; Uncharacterized protein
STRINGTraes_2BL_3A3353970.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.17e-40ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  4. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]