PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2BL_4611C1667.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Dof

Protein Properties

Length: 90aa MW: 9763.72 Da PI: 7.7513

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2BL_4611C1667.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	60.7	2.9e-19	55	90	2	37
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCr 37 ++++l+cprC st+tkfCyynnys++qPr++C++Cr Traes_2BL_4611C1667.1 55 EQQKLECPRCSSTDTKFCYYNNYSTAQPRHYCRTCR 90 6899*******************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.3E-16	57	90	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	18.482	59	90	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	6.0E-11	59	90	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 90 aa Download sequence Send to blast
MAPASASLLP AAGSKRPFAA DSAPDAAEQE QPLAQVNCGD QESAATKKNG QSQSEQQKLE 60 CPRCSSTDTK FCYYNNYSTA QPRHYCRTCR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM084351	6e-57	AM084351.1 Hordeum vulgare subsp. vulgare dof3 gene for dof zinc finger protein 3, exons 1-2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020186822.1	2e-41	dof zinc finger protein DOF1.7-like
TrEMBL	A0A3B6CGM9	1e-57	A0A3B6CGM9_WHEAT; Uncharacterized protein
TrEMBL	A0A446MWV3	1e-57	A0A446MWV3_TRITD; Uncharacterized protein
STRING	Traes_2BL_4611C1667.1	1e-59	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14047	24	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65590.1	4e-16	Dof family protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]