PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2BL_4B6057E06.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

TCP

Protein Properties

Length: 251aa MW: 26985.8 Da PI: 10.5489

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2BL_4B6057E06.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	108.2	1.3e-33	100	181	3	79
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.sec....eaesss 79 g+ + +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++t+eWLl+qa+p+i ++tg+++++a +c ++++ s Traes_2BL_4B6057E06.1 100 GAAKGAKDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTVEWLLRQAEPSILAATGSGTTPAvFSCssapSTAAVS 181 5666789********************************************************8888854443222111111 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.5E-29	104	193	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.413	105	159	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MKLQPLYKFA PHRVRDQADK ALSIHPSPSD HLPTHLCATR TKAKPPAAMA SRDAATFQLY 60 RPMAMPTATL MPQTMAMPGF SSAEAADDAV VRVPAPRTAG AAKGAKDRHS KVNGRGRRVR 120 MPIVCAARVF QLTRELGLKS DGQTVEWLLR QAEPSILAAT GSGTTPAVFS CSSAPSTAAV 180 SLLGKRPRED HEHEAAPSFW EALQARPVPW GLSPSLEAQA YASSVAQGHH HHLNLLSALS 240 GASRRPEEES R

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK359408	0.0	AK359408.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1096D21.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020178782.1	1e-118	transcription factor TCP7-like
Swissprot	Q9FMX2	2e-36	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A3B6C9W3	0.0	A0A3B6C9W3_WHEAT; Uncharacterized protein
TrEMBL	A0A446MIR8	0.0	A0A446MIR8_TRITD; Uncharacterized protein
STRING	Traes_2BL_4B6057E06.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1941	33	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08330.1	1e-38	TCP family protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]