PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_6899C8ABD.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GATA
Protein Properties Length: 425aa    MW: 45720.3 Da    PI: 6.9791
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_6899C8ABD.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.12.8e-19343377135
                   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                            Cs+Cg+ kTp+WR gp+g ktLCnaCG++y++ +l
  Traes_2BL_6899C8ABD.1 343 CSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRL 377
                            *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577164.13E-14336398No hitNo description
SMARTSM004012.3E-18337391IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.466337373IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.0E-15341375IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.12E-14342399No hitNo description
PROSITE patternPS003440343368IPR000679Zinc finger, GATA-type
PfamPF003203.0E-17343377IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MLHQTLIPSC LAFSASASPD PLPFASNATA AAPAAATHLR SSAMPSYAHH HSSLNERMDA  60
LKGSSRQEET PDEAAAEAPA AWGFAERDGF SVEDLLDLEE FCEPDKDGAD EPQEAPAADV  120
KEEKLNDGPQ QPVVSYELAP PAPPAPEIVD LPAHDVEEEL EWVSRIMDDS LSELPPQPAP  180
PASMMASLAA RPPQRRLPLP QRHPQDGAYR ALPSMSDPMR TPTICALSTE ALVPIKAKRS  240
KRSRASGWSL SGPTPDSTSS SSTTTTSSCS SSASFSPYFL MDSTHFGASE LMEEYNILPP  300
PPKKSKHGKS SKQKAKKRGR KPKNLPAHPS SAMEAATQSD RRCSHCGVQK TPQWRAGPEG  360
AKTLCNACGV RYKSGRLLPE YRPACSPTYV SSVHSNSHRK VLEMRRKKED GPLTVTATAP  420
AVASF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3588220.0AK358822.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1083M14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168016.10.0GATA transcription factor 5-like
TrEMBLA0A3B6CCR70.0A0A3B6CCR7_WHEAT; Uncharacterized protein
STRINGTraes_2BL_6899C8ABD.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.27e-40GATA transcription factor 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]