PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2BL_69E6AB6D1.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

SBP

Protein Properties

Length: 206aa MW: 22283.2 Da PI: 10.4584

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2BL_69E6AB6D1.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.2	7.2e-41	101	177	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +CqvegC++ l+ akeyhrrhkvCe+hskap v+v+g eqrfCqqCsrfh++ efD++krsCrrrLa+hnerrrk++ Traes_2BL_69E6AB6D1.2 101 RCQVEGCHMVLAGAKEYHRRHKVCEAHSKAPRVIVHGAEQRFCQQCSRFHAMAEFDDAKRSCRRRLAGHNERRRKSN 177 6**************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	9.9E-35	96	163	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.171	99	176	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.18E-38	100	179	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.6E-32	102	175	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MEGDGNARSR ATLAWDLGVQ WAPAASAAYP QHFLPPPGVA SQQQHMQQEL TSLKLGKRPS 60 NLAGGQVAQM DGSGVGGGRA VVEGKRKEKA AGATATAAMP RCQVEGCHMV LAGAKEYHRR 120 HKVCEAHSKA PRVIVHGAEQ RFCQQCSRFH AMAEFDDAKR SCRRRLAGHN ERRRKSNASD 180 AMARGSAHAH GNPCHYSHTS IYLARA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-32	92	175	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU964656	1e-96	EU964656.1 Zea mays clone 280651 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020169596.1	1e-114	squamosa promoter-binding-like protein 7
Swissprot	Q01JD1	1e-64	SPL7_ORYSI; Squamosa promoter-binding-like protein 7
Swissprot	Q7XT42	1e-64	SPL7_ORYSJ; Squamosa promoter-binding-like protein 7
TrEMBL	A0A3B6CBA1	1e-134	A0A3B6CBA1_WHEAT; Uncharacterized protein
STRING	Traes_2BL_69E6AB6D1.2	1e-150	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10303	34	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.3	1e-37	squamosa promoter binding protein-like 2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]