PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_7AED4E232.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WOX
Protein Properties Length: 237aa    MW: 25872.3 Da    PI: 9.5509
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_7AED4E232.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.23.7e-2094153357
                            --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
               Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                            +R+++++eq+++Le+l++   r+p+ +++e+++++l    +++ ++V++WFqN++a+e++
  Traes_2BL_7AED4E232.1  94 TRWNPSAEQIKVLEALYRGgMRTPNSAQIERITEELgrhgRIEGKNVFYWFQNHKARERQ 153
                            8*****************99**************************************97 PP
2Wus_type_Homeobox114.84.1e-3793155365
      Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                            +tRW+P++eQik+Le+ly+ G+rtPn+++i+rit+eL ++G+ie+kNVfyWFQN+kaRerqkq
  Traes_2BL_7AED4E232.1  93 TTRWNPSAEQIKVLEALYRGGMRTPNSAQIERITEELGRHGRIEGKNVFYWFQNHKARERQKQ 155
                            69***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003894.3E-891158IPR001356Homeobox domain
SuperFamilySSF466895.13E-1393159IPR009057Homeodomain-like
PfamPF000469.1E-1894153IPR001356Homeobox domain
CDDcd000863.58E-694155No hitNo description
Gene3DG3DSA:1.10.10.602.4E-894153IPR009057Homeodomain-like
PROSITE profilePS5007110.15599154IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0007165Biological Processsignal transduction
GO:0010067Biological Processprocambium histogenesis
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MRVHHLHVPS YLEKAASASS PSPATAPSTS PPSALFPYGA FQCLRPLAPK ISLPDQPRKL  60
VAPPDVLGRV RNATKLLSCT VRNHTVQVPV GGTTRWNPSA EQIKVLEALY RGGMRTPNSA  120
QIERITEELG RHGRIEGKNV FYWFQNHKAR ERQKQKRAAL LTLSTLDSSS PPATATTKDG  180
AGDDEKEACD DETMRCKRRC RTWGDGHGDA VAEVAADGCT DNVTLELFPL RPQGKAA
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF8361591e-91JF836159.1 Oryza sativa Japonica Group WUSCHEL-like homeobox protein (WOX4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020161616.11e-155WUSCHEL-related homeobox 4-like
SwissprotQ25AM21e-101WOX4_ORYSI; WUSCHEL-related homeobox 4
SwissprotQ7XTV31e-101WOX4_ORYSJ; WUSCHEL-related homeobox 4
TrEMBLA0A3B6CEU41e-176A0A3B6CEU4_WHEAT; Uncharacterized protein
TrEMBLA0A446MTN91e-176A0A446MTN9_TRITD; Uncharacterized protein
STRINGTraes_2BL_7AED4E232.11e-176(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP126923035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46480.11e-38WUSCHEL related homeobox 4
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]