PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_7BC3DF5C7.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Nin-like
Protein Properties Length: 247aa    MW: 28191.9 Da    PI: 10.4925
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_7BC3DF5C7.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK85.16.4e-27113162352
                 RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                            ++i+led+++yF+lpi++A+++L+++l++LK++CRq+GI+RWPhRk+ksl
  Traes_2BL_7BC3DF5C7.2 113 ASITLEDIAQYFHLPIREASRTLKIGLSILKKKCRQHGIPRWPHRKLKSL 162
                            68**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151919.49797185IPR003035RWP-RK domain
PfamPF020425.4E-23114162IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
GRRRHPPTPR RRRRRWPGAF RSSSSAGSAP LLLYSSLAVL LCFCAPPLDP PLCCCTPPLL  60
SSSAFVLLPW IRPSAAVLLL DPKAMANKDP SAVVANLLAP AEKQRRAHRA YIASITLEDI  120
AQYFHLPIRE ASRTLKIGLS ILKKKCRQHG IPRWPHRKLK SLDSLIHDLE FVIDDETERD  180
GVKQEDHMQD EKENQDAIEA LAKRKRMLET EKATIQQKPT LDLMAETKQF RQYVFKRKYR  240
AKTLVSE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113RRRHPPTPRRRRR
2914RRRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3738350.0AK373835.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3045A19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158589.11e-100protein RKD5-like
TrEMBLA0A446MKU71e-114A0A446MKU7_TRITD; Uncharacterized protein
STRINGTraes_2BL_7BC3DF5C7.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35590.12e-37RWP-RK domain-containing protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]