PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_9CD6E043A.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 92aa    MW: 10303.5 Da    PI: 10.6548
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_9CD6E043A.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.5e-191767155
                    AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           s+y+GVr +k +g+Wv+eIr p   g ++r++lg+f +ae+Aa a++ a+++l+g
  Traes_2BL_9CD6E043A.2 17 SQYRGVRKRK-WGKWVSEIRQP---GTKTRIWLGSFESAEMAAVAHDVAALRLRG 67
                           78*****999.**********8...325*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-231776IPR016177DNA-binding domain
PfamPF008473.9E-121767IPR001471AP2/ERF domain
CDDcd000182.39E-321775No hitNo description
Gene3DG3DSA:3.30.730.105.2E-321875IPR001471AP2/ERF domain
PROSITE profilePS5103223.5121875IPR001471AP2/ERF domain
SMARTSM003805.8E-371881IPR001471AP2/ERF domain
PRINTSPR003672.5E-101930IPR001471AP2/ERF domain
PRINTSPR003672.5E-104157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MDESGKEQLP NSSSSQSQYR GVRKRKWGKW VSEIRQPGTK TRIWLGSFES AEMAAVAHDV  60
AALRLRGRDA QLNFPGSVDR LPRPANSHPD DV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-181879567ATERF1
3gcc_A3e-181879567ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0965696e-91FP096569.1 Phyllostachys edulis cDNA clone: bphyem127p14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581277.12e-50ethylene-responsive transcription factor ERF027
RefseqXP_020194473.11e-50ethylene-responsive transcription factor ERF021-like
SwissprotQ9C9I23e-34ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A3B6CA296e-60A0A3B6CA29_WHEAT; Uncharacterized protein
STRINGTraes_2BL_9CD6E043A.26e-62(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22443389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.12e-28ERF family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]