PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_ABBC40952.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 71aa    MW: 8062.56 Da    PI: 11.8646
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_ABBC40952.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.19.7e-181260249
                           ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T.TSEEEEE CS
                 SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss.tgklyey 49
                           rie+ ++r + f kRr+g+ KKAeEL vLCda v ++++ + +g+++ +
  Traes_2BL_ABBC40952.1 12 RIEDRRRRGICFRKRRAGLVKKAEELAVLCDAHVGLLVINPfDGTFQRF 60
                           8*********************************999987646777666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.1E-16163IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.399351IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-17458IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-14525IPR002100Transcription factor, MADS-box
PfamPF003197.5E-201258IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-142540IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-144061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 71 aa     Download sequence    Send to blast
MARQRGSVVL RRIEDRRRRG ICFRKRRAGL VKKAEELAVL CDAHVGLLVI NPFDGTFQRF  60
AAPATYVLVP P
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693472e-59KF469347.1 Brachypodium distachyon MADS-box transcription factor 53 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020147558.14e-30MADS-box transcription factor 51-like isoform X1
TrEMBLA0A3B6C6M18e-38A0A3B6C6M1_WHEAT; Uncharacterized protein
STRINGTraes_2BL_ABBC40952.16e-44(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154931117
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]