PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_B397F2CE3.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 193aa    MW: 21397.1 Da    PI: 8.8755
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_B397F2CE3.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.4e-183989155
                    AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                           + ++GVr++  +grWvAeIr+p   + r +r +lg+f ta +Aa+a++ a+++l+g
  Traes_2BL_B397F2CE3.1 39 CPFRGVRQRT-WGRWVAEIREP---N-RgARLWLGTFATALDAARAYDSAARALYG 89
                           679****999.**********8...3.35***********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.0E-2940103IPR001471AP2/ERF domain
PROSITE profilePS5103220.564097IPR001471AP2/ERF domain
CDDcd000181.72E-254198No hitNo description
Gene3DG3DSA:3.30.730.101.3E-284197IPR001471AP2/ERF domain
PfamPF008473.4E-124189IPR001471AP2/ERF domain
PRINTSPR003673.4E-94152IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-194197IPR016177DNA-binding domain
PRINTSPR003673.4E-96379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MKQTPASVNQ QQNRKRCFPL RQSRKGCMKG KGGPENQRCP FRGVRQRTWG RWVAEIREPN  60
RGARLWLGTF ATALDAARAY DSAARALYGD CARLNLAAPP LLPMTATVPL PHAQAQQPPA  120
RSTDTNNTTA LYYPSSISTA STTTPTYLDT FDIEWSYYNA AGALELGDFE AYVEGLPKAK  180
DFGLEGFQEV MDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-134196662ATERF1
3gcc_A1e-134196662ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00519DAPTransfer from AT5G18450Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184362.11e-100LOW QUALITY PROTEIN: dehydration-responsive element-binding protein 2C-like
SwissprotQ84ZA12e-63DRE2C_ORYSJ; Dehydration-responsive element-binding protein 2C
TrEMBLA0A3B6CEI81e-141A0A3B6CEI8_WHEAT; Uncharacterized protein
STRINGTraes_2BL_B397F2CE3.11e-142(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55103454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.14e-26ERF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]