PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_D50CC6A1D.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 36aa    MW: 3997.51 Da    PI: 7.3478
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_D50CC6A1D.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.13.6e-071536122
                           TSSS-HHHHHHHHHHHHHTTTT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg 22
                           +g+WT+eEd+ lv+ +++ Gg+
  Traes_2BL_D50CC6A1D.1 15 KGPWTEEEDKTLVEHIQKRGGN 36
                           79***************99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.3E-9635IPR009057Homeodomain-like
SuperFamilySSF466899.72E-7636IPR009057Homeodomain-like
PROSITE profilePS5129411.6831036IPR017930Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 36 aa     Download sequence    Send to blast
MGRSPCCCHD AGVKKGPWTE EEDKTLVEHI QKRGGN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169251.11e-19myb-related protein Zm38-like
RefseqXP_020179028.11e-19myb-related protein Zm38-like
TrEMBLA0A3B6CCI09e-19A0A3B6CCI0_WHEAT; Uncharacterized protein
TrEMBLA0A446MP609e-19A0A446MP60_TRITD; Uncharacterized protein
STRINGEMT022842e-18(Aegilops tauschii)
STRINGTraes_2BL_D50CC6A1D.13e-19(Triticum aestivum)
STRINGTraes_2BL_D50CC6A1D1.13e-19(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.22e-12myb domain protein 9
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]