PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2BL_DE9A7327E.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

GRF

Protein Properties

Length: 227aa MW: 24077.2 Da PI: 10.2006

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2BL_DE9A7327E.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.2	3.5e-24	134	178	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 ++ep rCrRtDGKkWRCsr v++g+k+CErH+hrgr r rk++e+ Traes_2BL_DE9A7327E.1 134 EPEPDRCRRTDGKKWRCSRGVMPGHKYCERHVHRGRGRARKPVEA 178 699***************************************985 PP
2	QLQ	55.8	1.4e-19	68	104	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 sa+T +Q q+L++Q+l+y+y+aan+PvP +L+++i+k Traes_2BL_DE9A7327E.1 68 SALTFMQRQELEHQVLIYRYFAANAPVPVHLVLPIWK 104 799*********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	2.9E-6	68	104	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	7.1E-12	69	103	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	21.693	69	104	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.282	134	178	IPR014977	WRC domain
Pfam	PF08879	4.9E-20	135	177	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MTERRQEHSP PSKLPRLSGP DADDNDGAGT VTMAAPSPLV LGLGLGVGGS SSDSGRGDAE 60 ASAATRPSAL TFMQRQELEH QVLIYRYFAA NAPVPVHLVL PIWKSVAASS SAPQRFPSLA 120 GLGSMCYDHR SSMEPEPDRC RRTDGKKWRC SRGVMPGHKY CERHVHRGRG RARKPVEAAP 180 ATSAIPIRAM HAADAQGATS AHAAPPQRLG FSSPAGVYLA HGTARAT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU976393	1e-102	EU976393.1 Zea mays clone 881905 growth-regulating factor mRNA, complete cds.
GenBank	KJ727857	1e-102	KJ727857.1 Zea mays clone pUT5948 GRF transcription factor (GRF9) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020188115.1	1e-139	growth-regulating factor 12-like
Refseq	XP_020197443.1	1e-139	growth-regulating factor 12-like
Swissprot	Q6AWX7	4e-85	GRF12_ORYSJ; Growth-regulating factor 12
TrEMBL	A0A3B6CD35	1e-163	A0A3B6CD35_WHEAT; Uncharacterized protein
STRING	Traes_2BL_DE9A7327E.1	1e-164	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6221	30	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36400.1	7e-34	growth-regulating factor 3

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]