PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_E8D551BE0.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Nin-like
Protein Properties Length: 394aa    MW: 44467.7 Da    PI: 11.7987
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_E8D551BE0.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK80.22.2e-25254303352
                 RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                            ++i+l d++ yF+lpi++A++ L++++++LK++CRqyGI+RWPhRkiksl
  Traes_2BL_E8D551BE0.2 254 ASITLVDIAPYFHLPIREASRALKIGVSILKQKCRQYGIPRWPHRKIKSL 303
                            78**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151919.884238323IPR003035RWP-RK domain
PfamPF020422.6E-20255303IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
IVAASRGGRA AHLPPCRRLL HSLRRCAPPR SNFPPSQSRL FPPPQEARLL PWTPPPPPPS  60
PPSPRSPSSP ARSTKAPCGA CTGTGSSRWE GGARGTGGWS GSSPSPPPRA ARSRSPPPRR  120
GYSRSSGAAA RRTARARCWA PGAASSPSIP SPPSRCRPCL PRCCAPSGTR VWCSCLRCTT  180
TCTWCFSFRN FNRPRSSSNV IRMRNRPVWM QRIKPVMLKL KKSQDLILMR IPKFGEELPA  240
HAERRRRAKK QHIASITLVD IAPYFHLPIR EASRALKIGV SILKQKCRQY GIPRWPHRKI  300
KSLDSLISDL EFVMDDTDGD VVQKETRRQR EKEKEEKEKE KQEAIRALAK RKRLLESEKE  360
IIQQKPALDL MAETKLFRED VFKRRYRAKR LPGR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3723870.0AK372387.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3001B21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGTraes_2BL_E8D551BE0.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35590.13e-29RWP-RK domain-containing protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]