PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_F38E03233.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 157aa    MW: 17414.6 Da    PI: 8.7936
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_F38E03233.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.61.9e-12100146354
                            HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            ++h ++Er RRd++N +f  Lr  +P+       +++Ka+ L  Av YI +L
  Traes_2BL_F38E03233.1 100 VSHVQAERLRRDKLNRRFCDLRAAVPNV-----SRMDKASLLADAVAYIAEL 146
                            5899***********************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.5E-1595153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.85697146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.71E-9100151No hitNo description
PfamPF000105.9E-10100146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-14101156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-10103152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MDDLLSPSSS FVPPSPSSHF STVGQQVLEF VSREIPEQWL FDDGTMSQNA DRELSPTGRT  60
LLRSAELSEL PPSLPATLQC QTNRRGRKTG PRSDGRHSAV SHVQAERLRR DKLNRRFCDL  120
RAAVPNVSRM DKASLLADAV AYIAELRSRV ARLGDEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-2195152259Transcription factor MYC2
5gnj_B6e-2195152259Transcription factor MYC2
5gnj_E6e-2195152259Transcription factor MYC2
5gnj_F6e-2195152259Transcription factor MYC2
5gnj_G6e-2195152259Transcription factor MYC2
5gnj_I6e-2195152259Transcription factor MYC2
5gnj_M6e-2195152259Transcription factor MYC2
5gnj_N6e-2195152259Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020195652.12e-70transcription factor MYC2-like
TrEMBLA0A3B6CCH91e-109A0A3B6CCH9_WHEAT; Uncharacterized protein
TrEMBLA0A446MP811e-109A0A446MP81_TRITD; Uncharacterized protein
STRINGTraes_2BL_F38E03233.11e-110(Triticum aestivum)
STRINGTraes_2BL_F38E032331.11e-110(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.13e-22bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]