PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2BS_00566A85C.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NAC

Protein Properties

Length: 352aa MW: 38805.9 Da PI: 5.428

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2BS_00566A85C.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.1	1.4e-52	19	149	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhPtdee+v++yL++k+ ++ +++ vi++vd++k+ePwdLp k+k +ekewyfF+++d+ky+tg+r+nrat++gyWkatgk Traes_2BS_00566A85C.1 19 LPPGFRFHPTDEEVVTHYLTPKAVNNAFSC-LVIADVDLNKTEPWDLPGKAKMGEKEWYFFVHKDRKYPTGTRTNRATEKGYWKATGK 105 79************************99.78***********99999******************************* PP NAM 89 dkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrle 129 dke+++ + lvg+kktLvfy+grap+g kt vmheyrle Traes_2BS_00566A85C.1 106 DKEIFRGkgrDAVLVGMKKTLVFYTGRAPRGDKTPYVMHEYRLE 149 *984444445**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.53E-60	15	172	IPR003441	NAC domain
PROSITE profile	PS51005	56.704	19	172	IPR003441	NAC domain
Pfam	PF02365	4.4E-27	20	148	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MSDVTAVMDL EVEEPRLSLP PGFRFHPTDE EVVTHYLTPK AVNNAFSCLV IADVDLNKTE 60 PWDLPGKAKM GEKEWYFFVH KDRKYPTGTR TNRATEKGYW KATGKDKEIF RGKGRDAVLV 120 GMKKTLVFYT GRAPRGDKTP YVMHEYRLEG QLPHRLPRSA KNDWAVCRVF DKDLAAKNAP 180 PPMAPAAVGV MEDPYAFLDV DDFLNNPDLL NNADLPMLMD SPSGADDFAG ASSSTSSAAV 240 PLEPDMEHLS IKTEPPVPQQ QMQSPNYFFM PAATPNGNHG GGGYSPYQAM GDQQTAIRRH 300 CKPEAASSSA LLSPSLGFDA GALAGADTSF LMPSSRSYLD LEAMDYSNMW KI

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MSDVTAVMDL EVEEPRLSLP PGFRFHPTDE EVVTHYLTPK AVNNAFSCLV IADVDLNKTE  60
PWDLPGKAKM GEKEWYFFVH KDRKYPTGTR TNRATEKGYW KATGKDKEIF RGKGRDAVLV  120
GMKKTLVFYT GRAPRGDKTP YVMHEYRLEG QLPHRLPRSA KNDWAVCRVF DKDLAAKNAP  180
PPMAPAAVGV MEDPYAFLDV DDFLNNPDLL NNADLPMLMD SPSGADDFAG ASSSTSSAAV  240
PLEPDMEHLS IKTEPPVPQQ QMQSPNYFFM PAATPNGNHG GGGYSPYQAM GDQQTAIRRH  300
CKPEAASSSA LLSPSLGFDA GALAGADTSF LMPSSRSYLD LEAMDYSNMW KI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-53	8	178	4	171	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-53	8	178	4	171	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-53	8	178	4	171	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-53	8	178	4	171	NO APICAL MERISTEM PROTEIN
3swm_A	6e-53	8	178	7	174	NAC domain-containing protein 19
3swm_B	6e-53	8	178	7	174	NAC domain-containing protein 19
3swm_C	6e-53	8	178	7	174	NAC domain-containing protein 19
3swm_D	6e-53	8	178	7	174	NAC domain-containing protein 19
3swp_A	6e-53	8	178	7	174	NAC domain-containing protein 19
3swp_B	6e-53	8	178	7	174	NAC domain-containing protein 19
3swp_C	6e-53	8	178	7	174	NAC domain-containing protein 19
3swp_D	6e-53	8	178	7	174	NAC domain-containing protein 19
4dul_A	6e-53	8	178	4	171	NAC domain-containing protein 19
4dul_B	6e-53	8	178	4	171	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to DNA in promoters of target genes on a specific bipartite motif 5'-[ACG][CA]GT[AG](5-6n)[CT]AC[AG]-3' (PubMed:23340744). Promotes lateral root development (PubMed:16359384). Triggers the expression of senescence-associated genes during age-, salt- and dark-induced senescence through a regulatory network that may involve cross-talk with salt- and H(2)O(2)-dependent signaling pathways (PubMed:9351240, PubMed:15295076, PubMed:20113437, PubMed:21303842). Regulates also genes during seed germination (PubMed:20113437). Regulates positively aging-induced cell death (PubMed:19229035). Involved in age-related resistance (ARR) against Pseudomonas syringae pv. tomato and Hyaloperonospora arabidopsidis (PubMed:19694953). Antagonizes GLK1 and GLK2 transcriptional activity, shifting the balance from chloroplast maintenance towards deterioration during leaf senescence (PubMed:23459204). Promotes the expression of senescence-associated genes, including ENDO1/BFN1, SWEET15/SAG29 and SINA1/At3g13672, during senescence onset (PubMed:23340744). {ECO:0000269\|PubMed:15295076, ECO:0000269\|PubMed:16359384, ECO:0000269\|PubMed:19229035, ECO:0000269\|PubMed:19694953, ECO:0000269\|PubMed:20113437, ECO:0000269\|PubMed:21303842, ECO:0000269\|PubMed:23340744, ECO:0000269\|PubMed:23459204, ECO:0000269\|PubMed:9351240}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: High levels during senescence (e.g. age-, salt- and dark-related) (PubMed:19229035, PubMed:20113437, PubMed:21511905, PubMed:22930749). By salt stress in an ethylene- and auxin-dependent manner (PubMed:16359384, PubMed:19608714, PubMed:20113437, PubMed:20404534). Induced by H(2)O(2) (PubMed:20404534). Accumulates in response to abscisic acid (ABA), ethylene (ACC) and auxin (NAA) (PubMed:16359384, PubMed:19608714). Repressed by high auxin (IAA) levels (PubMed:21511905). Age-related resistance (ARR)-associated accumulation (PubMed:19694953). Repressed by miR164 (PubMed:19229035). {ECO:0000269\|PubMed:16359384, ECO:0000269\|PubMed:19229035, ECO:0000269\|PubMed:19608714, ECO:0000269\|PubMed:19694953, ECO:0000269\|PubMed:20113437, ECO:0000269\|PubMed:20404534, ECO:0000269\|PubMed:21511905, ECO:0000269\|PubMed:22930749}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK364498	0.0	AK364498.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2025P03.
GenBank	AK364649	0.0	AK364649.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2027E04.
GenBank	AK367098	0.0	AK367098.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2051F14.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020161331.1	0.0	NAC domain-containing protein 92-like
Swissprot	Q9FKA0	4e-82	NAC92_ARATH; NAC domain-containing protein 92
TrEMBL	A0A3B6C016	0.0	A0A3B6C016_WHEAT; Uncharacterized protein
TrEMBL	A0A3S5XDC8	0.0	A0A3S5XDC8_9POAL; NAC transcription factor
TrEMBL	A0A446LWS3	0.0	A0A446LWS3_TRITD; Uncharacterized protein
STRING	Traes_2BS_00566A85C.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1862	38	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39610.1	1e-79	NAC domain containing protein 6

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Manacorda CA, et al. Salicylic acid determines differential senescence produced by two Turnip mosaic virus strains involving reactive oxygen species and early transcriptomic changes. Mol. Plant Microbe Interact., 2013. 26(12): p. 1486-98 [PMID:23945002] Khan M,Rozhon W,Poppenberger B The role of hormones in the aging of plants - a mini-review. Gerontology, 2014. 60(1): p. 49-55 [PMID:24135638] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Bohner A,Kojima S,Hajirezaei M,Melzer M,von Wirén N Urea retranslocation from senescing Arabidopsis leaves is promoted by DUR3-mediated urea retrieval from leaf apoplast. Plant J., 2015. 81(3): p. 377-87 [PMID:25440717] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Kim H, et al. Circadian control of ORE1 by PRR9 positively regulates leaf senescence in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(33): p. 8448-8453 [PMID:30065116]