PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BS_03909B330.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family TCP
Protein Properties Length: 112aa    MW: 11784.1 Da    PI: 4.2434
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BS_03909B330.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP72.81e-221622282
                    TCP 22 vRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssa 82
                           +Rls+ +a++fF+Lqd LGfdk+skt+eWLl+q+kpai+ l++ +  +a ++  +++++ ++
  Traes_2BS_03909B330.1  1 MRLSVGVAREFFALQDLLGFDKASKTVEWLLTQSKPAIDRLADGTPGAAAAAaGPSKEKGEG 62
                           8*****************************************98433332222222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136925.391141IPR017887Transcription factor TCP subgroup
PfamPF036342.8E-20158IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MRLSVGVARE FFALQDLLGF DKASKTVEWL LTQSKPAIDR LADGTPGAAA AAAGPSKEKG  60
EGATSSGTGC FEDAREEEHD VRDLMKGIGG EGELDWFMSE AAAIGHPMEG LD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0634574e-40BT063457.1 Zea mays full-length cDNA clone ZM_BFc0065H12 mRNA, complete cds.
GenBankEU9756364e-40EU975636.1 Zea mays clone 494952 teosinte branched1 protein mRNA, complete cds.
GenBankKJ7268964e-40KJ726896.1 Zea mays clone pUT3439 TCP transcription factor (TCP15) mRNA, partial cds.
GenBankKM5786204e-40KM578620.1 Paspalum malacophyllum isolate TK058-6 retarded palea 1 protein (rep1) gene, partial cds.
GenBankKM5786214e-40KM578621.1 Paspalum malacophyllum isolate TK058-1 retarded palea 1 protein (rep1) gene, partial cds.
GenBankKM5786224e-40KM578622.1 Paspalum malacophyllum isolate TK058-7 retarded palea 1 protein (rep1) gene, partial cds.
GenBankKM5786794e-40KM578679.1 Hyparrhenia cf. rufa Kellogg PI 356815 isolate TK108-2 retarded palea 1 protein (rep1) gene, partial cds.
GenBankKM5786804e-40KM578680.1 Hyparrhenia cf. rufa Kellogg PI 356815 isolate TK108-6 retarded palea 1 protein (rep1) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186977.11e-60transcription factor TCP12-like
TrEMBLA0A3B6BZN55e-73A0A3B6BZN5_WHEAT; Uncharacterized protein
TrEMBLA0A446LR755e-73A0A446LR75_TRITD; Uncharacterized protein
STRINGTraes_2BS_03909B330.19e-75(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40523172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.25e-16TCP family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]