PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BS_1751C4BBF.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 251aa    MW: 27737.7 Da    PI: 4.518
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BS_1751C4BBF.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR172.59.6e-23119238290
                   FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk................................tekerrtrae 57 
                             Yn+YA ++GFs+++++s+k  ++g  +k++fvC+k  ++++   +                                ++k+r++ + 
  Traes_2BS_1751C4BBF.2 119 HYNAYALQIGFSIKMNTSRKAVKTGVLIKQQFVCNKFREADDGGAEkipvlddiveqtkdddededivfldddnktkkRSKKRKRDKI 206
                            6***********************************99999998889***************************99988888889999 PP

                   FAR1  58 trtgCkaklkvkkekdgkwevtkleleHnHela 90 
                             +tgCkak++vk+  dg+wev+ ++ eHnH+l+
  Traes_2BS_1751C4BBF.2 207 VQTGCKAKMVVKLI-DGRWEVIYFVGEHNHPLV 238
                            9*************.****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.7E-21119238IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MIDLNEEPDD MDIGDPVNST QQAAQNPELT GDSPTPHIVQ NATAPVAKTV ETDEQAPAAQ  60
ESETDGHTLD GTDAAGDTSV TVGNGLTGFG AENDEEAWSQ PKEPHVGMRF DTLEGAKEHY  120
NAYALQIGFS IKMNTSRKAV KTGVLIKQQF VCNKFREADD GGAEKIPVLD DIVEQTKDDD  180
EDEDIVFLDD DNKTKKRSKK RKRDKIVQTG CKAKMVVKLI DGRWEVIYFV GEHNHPLVDK  240
PSLTKYLRSH Q
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194049.13e-63protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A453A2Q11e-172A0A453A2Q1_AEGTS; Uncharacterized protein
STRINGTraes_2BS_1751C4BBF.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP9528843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-16FAR1-related sequence 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]