PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BS_186EA570A.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family SBP
Protein Properties Length: 192aa    MW: 20129.4 Da    PI: 10.4695
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BS_186EA570A.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP133.37.8e-4286162278
                            -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                    SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                            Cq+e+C adlseak+yhrrhkvCe+hska+vv+v+gl+qrfCqqCsrfhel efD++krsCrrrLa+hnerrrk++a
  Traes_2BS_186EA570A.1  86 CQAERCGADLSEAKRYHRRHKVCEAHSKAAVVVVAGLRQRFCQQCSRFHELLEFDDQKRSCRRRLAGHNERRRKSSA 162
                            **************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.9E-3480147IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.0683160IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.36E-3984163IPR004333Transcription factor, SBP-box
PfamPF031102.8E-3186159IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010321Biological Processregulation of vegetative phase change
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MDRKDKSRKS SSAASMAALA AAAAAGDVAR ADGMSGEEDQ KLKLVNVPVV SVGGSSSSAA  60
AVAVRRGSGA AGAVATGAAG AGGPSCQAER CGADLSEAKR YHRRHKVCEA HSKAAVVVVA  120
GLRQRFCQQC SRFHELLEFD DQKRSCRRRL AGHNERRRKS SAEANGGDGC RHADQDGRSH  180
PGNPPLNHFQ IR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-3677159184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0916721e-142FP091672.1 Phyllostachys edulis cDNA clone: bphylf033o15, full insert sequence.
GenBankFP0944781e-142FP094478.1 Phyllostachys edulis cDNA clone: bphyst005i03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152957.11e-133squamosa promoter-binding-like protein 13
SwissprotQ6Z4611e-51SPL13_ORYSJ; Squamosa promoter-binding-like protein 13
TrEMBLA0A385UKL61e-133A0A385UKL6_WHEAT; GLW7
TrEMBLA0A446M6U61e-133A0A446M6U6_TRITD; Uncharacterized protein
STRINGTraes_2BS_186EA570A.11e-134(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85243248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.26e-40squamosa promoter binding protein-like 4
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]