PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2BS_2C75C54A9.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 63aa MW: 6902.88 Da PI: 10.0812

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2BS_2C75C54A9.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.8	0.00076	48	59	3	14
ETTTTEEESSHH CS zf-C2H2 3 CpdCgksFsrks 14 C++C ksFs+ Traes_2BS_2C75C54A9.1 48 CQICQKSFSTTA 59 *********976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57783	2.55E-12	1	60	No hit	No description
Pfam	PF05129	6.6E-13	2	60	IPR007808	Transcription elongation factor 1

Sequence ? help Back to Top
Protein Sequence Length: 63 aa Download sequence Send to blast
MGKRKVSAKP PTRKRMDKLD MAFSCPFCNH GSNGWTSDMK NLTGEANCQI CQKSFSTTAN 60 GTS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020154446.1	6e-27	transcription elongation factor 1 homolog
Refseq	XP_020154450.1	6e-27	transcription elongation factor 1 homolog
Refseq	XP_020154454.1	6e-27	transcription elongation factor 1 homolog
Swissprot	Q8LHP0	7e-25	ELOF1_ORYSJ; Transcription elongation factor 1 homolog
TrEMBL	A0A446M600	2e-36	A0A446M600_TRITD; Transcription elongation factor 1 homolog
STRING	Traes_2BS_2C75C54A9.1	3e-40	(Triticum aestivum)

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]