PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2BS_5DF7F4FEE.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

LBD

Protein Properties

Length: 237aa MW: 24417.7 Da PI: 8.4115

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2BS_5DF7F4FEE.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	96	4.1e-30	17	118	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 +C++C+vlr++C++ Cvl+p++ +++q +++ +++k+FG++ ++++l+a+pe++r+++++sl+yeA r+ +Pv+Gavg+++++ Traes_2BS_5DF7F4FEE.1 17 SCNGCRVLRKGCNEACVLRPCLlwieaADAQGHATLFAAKFFGRAGLMSFLTAVPEQQRPAVFQSLLYEAAGRTINPVSGAVGLLWAG 104 6*******************9998666778**************************************************** PP DUF260 84 qqqleqlkaelall 97 +++l++++++++l+ Traes_2BS_5DF7F4FEE.1 105 SWHLCEAAVQTVLR 118 *****9998776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	6	1	18	No hit	No description
PROSITE profile	PS50891	18.504	16	122	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-25	17	116	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006807	Biological Process	nitrogen compound metabolic process
GO:0060776	Biological Process	simple leaf morphogenesis

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MRGSERAAVS ASTSGMSCNG CRVLRKGCNE ACVLRPCLLW IEAADAQGHA TLFAAKFFGR 60 AGLMSFLTAV PEQQRPAVFQ SLLYEAAGRT INPVSGAVGL LWAGSWHLCE AAVQTVLRGG 120 AIRPLPELAG GVPEGGVGGS DLFASSSRRA VVGCSTYSAA KRVTPRKTWA PEAASHHQEP 180 SCDLGLFLTP GSAAAAEGER RARRAGTPSM SSDGSVTTSA GAGAGGEKEP ELLNLFV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK363859	0.0	AK363859.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2019I02.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020191646.1	1e-145	LOB domain-containing protein 37-like
Swissprot	Q9FN11	2e-67	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	A0A3B6C346	1e-168	A0A3B6C346_WHEAT; Uncharacterized protein
TrEMBL	A0A446M392	1e-168	A0A446M392_TRITD; Uncharacterized protein
STRING	Traes_2BS_5DF7F4FEE.1	1e-169	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4084	36	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	3e-64	LOB domain-containing protein 37

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]