PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BS_667E8520D.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 205aa    MW: 23701.9 Da    PI: 7.7346
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BS_667E8520D.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.74.3e-131191911290
                            HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                     B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                            ++  l +  +f  eh  +    + ++l de+ ++++v +  r +s++  l +GW+eF+ +n+L egD +vF+l++r  f
  Traes_2BS_667E8520D.2 119 SLTSLHILAQFSMEHLPD--HRMRMVLVDEEEEEFKVLY--RPHSSS--LITGWSEFAVDNELVEGDCLVFQLIKRALF 191
                            344467888999899433..5578***************..999988..556********************9986544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.31E-16105192IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-15106192IPR015300DNA-binding pseudobarrel domain
CDDcd100174.95E-16110188No hitNo description
SMARTSM010193.4E-11112200IPR003340B3 DNA binding domain
PfamPF023621.0E-10118189IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
NSYEEQRRRQ VEENKRKLEE LRLHHLSAAV REAAVKPRLK RKAPKPRDAA DDAPPRRSGR  60
IATLPEQPDY RDNVRLGTGK PRQQKEVKPD HAYAIAKAEE LQDELGSDYP TFVKPMPQSL  120
TSLHILAQFS MEHLPDHRMR MVLVDEEEEE FKVLYRPHSS SLITGWSEFA VDNELVEGDC  180
LVFQLIKRAL FKHVSRCVEG TEKAQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3743460.0AK374346.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3061L19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158478.11e-132B3 domain-containing protein Os06g0194400-like
SwissprotQ69V362e-58Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLA0A446M0M31e-137A0A446M0M3_TRITD; Uncharacterized protein
STRINGTraes_2BS_667E8520D.21e-150(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP175638103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.13e-24B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]