PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2BS_6859C24E5.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Dof

Protein Properties

Length: 479aa MW: 50918 Da PI: 6.1711

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2BS_6859C24E5.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121	4.1e-38	102	161	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCyynny+++qPr+fC++C+ryWt+GG++rn+PvG+grrk+k+s Traes_2BS_6859C24E5.1 102 PDKILPCPRCNSMDTKFCYYNNYNIHQPRHFCRGCQRYWTAGGSMRNLPVGAGRRKSKSS 161 7899*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-30	99	159	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.7E-31	104	160	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.127	106	160	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	108	144	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence Send to blast
MELAGAAHPQ PPESDVAPPR TPPQAPAEDS CKDTGDTRIT EENSCTPPDL NLSQPNNSGL 60 NSSSACENQT SNSDEMTEPE STLEAAKTKG DGSNKEKVLK KPDKILPCPR CNSMDTKFCY 120 YNNYNIHQPR HFCRGCQRYW TAGGSMRNLP VGAGRRKSKS SGTNCNGILI PGSSLAAPGG 180 DASVIPLPIK ENQPAVLFGS DATLPNSMAS LLRVEEQNKN SNPASTAHPR NGENQTCPPS 240 AATSDNPRIE SVKVAVGVHQ NGITGDCNGV TPMPPIPCFP GPPFMYPWNP AWNGVPAMAA 300 PVCPVPAEPA NCSENGHGGN IQWNFPSMVP MPGFCGPPIP FPLMPPSVWP LVSPWPNGAW 360 SAPWLGPGYS MSAAPPTSSS TCSDSGSPVL GKHPRDSDPQ GGEKAEKSLW IPKTLRIDDP 420 DEAAKSSIWT TLGIEPGERG MFRPFQPKSG GREQMSNAAR VMQANPAAQS RFASFQEMT

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence Send to blast

MELAGAAHPQ PPESDVAPPR TPPQAPAEDS CKDTGDTRIT EENSCTPPDL NLSQPNNSGL  60
NSSSACENQT SNSDEMTEPE STLEAAKTKG DGSNKEKVLK KPDKILPCPR CNSMDTKFCY  120
YNNYNIHQPR HFCRGCQRYW TAGGSMRNLP VGAGRRKSKS SGTNCNGILI PGSSLAAPGG  180
DASVIPLPIK ENQPAVLFGS DATLPNSMAS LLRVEEQNKN SNPASTAHPR NGENQTCPPS  240
AATSDNPRIE SVKVAVGVHQ NGITGDCNGV TPMPPIPCFP GPPFMYPWNP AWNGVPAMAA  300
PVCPVPAEPA NCSENGHGGN IQWNFPSMVP MPGFCGPPIP FPLMPPSVWP LVSPWPNGAW  360
SAPWLGPGYS MSAAPPTSSS TCSDSGSPVL GKHPRDSDPQ GGEKAEKSLW IPKTLRIDDP  420
DEAAKSSIWT TLGIEPGERG MFRPFQPKSG GREQMSNAAR VMQANPAAQS RFASFQEMT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK358805	0.0	AK358805.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1083I10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020181996.1	0.0	cyclic dof factor 1-like isoform X1
TrEMBL	A0A3B6C011	0.0	A0A3B6C011_WHEAT; Uncharacterized protein
STRING	Traes_2BS_6859C24E5.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-42	cycling DOF factor 2

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]