PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BS_84238AD38.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HRT-like
Protein Properties Length: 549aa    MW: 60009.9 Da    PI: 9.9651
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BS_84238AD38.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like55.41e-17303333131
               HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                            +CGv+ledGs C + P++gRKRCe HKG+R+
  Traes_2BS_84238AD38.1 303 VCGVMLEDGSSCLEDPMEGRKRCELHKGRRV 333
                            7*****************************7 PP
2HRT-like28.13.4e-09464490128
               HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKG 28 
                            iCGv +++G  Ck  Pv gR RCeeH G
  Traes_2BS_84238AD38.1 464 ICGVVTDNG-YCKLAPVTGRERCEEHGG 490
                            8*******9.6***************66 PP
3HRT-like47.72.6e-15510539130
               HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 
                            +CG++ +dGs+Ck+qP+  RKRC+ HKG+R
  Traes_2BS_84238AD38.1 510 VCGARASDGSPCKNQPIARRKRCALHKGQR 539
                            7****************************9 PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000033Biological Processregulation of seed dormancy process
GO:0097100Molecular Functionsupercoiled DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MPAVAAARLK REDCPRTKHD SLFSPWKVLV GPSDWEDHSA GKEGVQRYHT RNLPDNFPGL  60
YELGVARPSY DGVRAGRNRS VVVVVVYLGQ ADSVRARLQQ YGRTGSHLDT GNPLAAVGKA  120
EMNALTAGPG LFREVFSRGY SVMFRCALMG SKKAAEKTEA QLLGVFDYAW NKLQNGVCRR  180
EEILLKLEQG SHRLSLLGRV QHFKQRVFGE KAGIKINSSG SVEISSGSMK NMLPRVRRFV  240
GFRPRLVNSG DGLNEAIDIH RKCTPQTNTA GNKQARRKSE GYKVKKIDVI KRQTAPIREA  300
EAVCGVMLED GSSCLEDPME GRKRCELHKG RRVRVAYSRK VSSSSSTCQV AIPTVESIPQ  360
QTANPSKPDK AWQTNADQSK NLSTNVKEPS QQRNSLEAKE MKIGEAPTED EAYGTSHAES  420
QFHQDEPVGR KWFELLKAQK SASAPSLRGQ GCQTREANDD ASAICGVVTD NGYCKLAPVT  480
GRERCEEHGG IEVTGASSAP CSGRSGWPSV CGARASDGSP CKNQPIARRK RCALHKGQRG  540
CCASTPSVK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2520400.0AK252040.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf148d05, mRNA sequence.
GenBankAK3627340.0AK362734.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2009M06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020159698.10.0protein EFFECTOR OF TRANSCRIPTION 2-like
TrEMBLA0A446M3080.0A0A446M308_TRITD; Uncharacterized protein
STRINGTraes_2BS_84238AD38.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79483443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.11e-59effector of transcription2
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]