PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2BS_8A40B568C.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bHLH

Protein Properties

Length: 270aa MW: 29334.8 Da PI: 5.2123

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2BS_8A40B568C.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.8	0.00022	44	89	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + erE+ Rd +N+ f eL e+l + + + Ka iL+ +++ +++L Traes_2BS_8A40B568C.1 44 KAEREKHKRDLLNDLFGELGEMLEAD----RQTNGKACILTDTTRILRDL 89 579********************997....57788888998888887776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.54E-10	37	109	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	9.388	39	89	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-7	44	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010106	Biological Process	cellular response to iron ion starvation
GO:0055072	Biological Process	iron ion homeostasis
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MVAMLPAARG DAAPATSAGA AEKLVRGPVA DGKCKKKAPR MIHKAEREKH KRDLLNDLFG 60 ELGEMLEADR QTNGKACILT DTTRILRDLL SQLESLRKEN STLQNESHYV TMERNELQDE 120 NDVLRNEILE LQNELATRPA GNPGWGHATA GSPHAASTVF PSHQPMQPST IASAVFPLQQ 180 PLQQTTILEH PYAPPPPPRE LKLFPDTASD IEGLEPSEDP EAANHIARPL ARYPTESASW 240 PVTVSLGLPR TEDEQCSSGT TGSSSASSRD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269\|PubMed:25617318}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ534275	0.0	KJ534275.1 Triticum aestivum isolate Ta_IRO3_2 putative transcription factor bHLH mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020175951.1	1e-147	transcription factor bHLH47-like
Swissprot	Q69V10	4e-82	BH062_ORYSJ; Transcription factor BHLH062
TrEMBL	W5BLT2	0.0	W5BLT2_WHEAT; Putative transcription factor bHLH
STRING	Traes_2BS_8A40B568C.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2481	38	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	3e-25	bHLH family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Wu H,Ye H,Yao R,Zhang T,Xiong L OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice. Plant Sci., 2015. 232: p. 1-12 [PMID:25617318]