PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BS_8AD8CD022.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 108aa    MW: 12197.5 Da    PI: 11.8762
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BS_8AD8CD022.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.28e-154801893
                           --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS
                     B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93
                           +p +f ++hg+ ++++++l++   +g+sW v+l+++ +s++     l+ GW +F+ +ngL +gD++ F+  g+ s +e +
  Traes_2BS_8AD8CD022.1  4 VPVEFQNAHGYAERSKVELRM---RGKSWFVNLKHSPRSRGrprASLRYGWHQFCVDNGLGVGDTCFFRALGEgSAGEXL 80
                           79999999*999888766664...67*******994444444669************************88876777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.393184IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.6E-20274IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-14374IPR015300DNA-binding pseudobarrel domain
PfamPF023623.3E-12479IPR003340B3 DNA binding domain
CDDcd100179.41E-12475No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MQNVPVEFQN AHGYAERSKV ELRMRGKSWF VNLKHSPRSR GRPRASLRYG WHQFCVDNGL  60
GVGDTCFFRA LGEGSAGEXL PSSRRRQRRR GPPSQGGGEE ARRQLPGL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18489RRQRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3769987e-91AK376998.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3145A16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020148430.11e-49B3 domain-containing protein Os03g0212300-like
SwissprotA3A4636e-31Y2042_ORYSJ; B3 domain-containing protein LOC_Os02g10420
SwissprotQ10Q261e-29Y3123_ORYSJ; B3 domain-containing protein Os03g0212300
TrEMBLA0A453IN103e-51A0A453IN10_AEGTS; Uncharacterized protein
STRINGTraes_2BS_8AD8CD022.13e-72(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47483264
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]