PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2BS_8D66D6B82.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bZIP

Protein Properties

Length: 336aa MW: 37457.4 Da PI: 9.5478

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2BS_8D66D6B82.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	29.4	1.7e-09	51	90	5	44
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 k rr+++NReAAr+sR+RKk ++++Le +L + ++ Traes_2BS_8D66D6B82.1 51 KTLRRLAQNREAARKSRLRKKSYVQQLESSKLKLAQLEQE 90 7889************************855444444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.7E-6	47	110	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.335	49	93	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	9.85E-7	51	94	No hit	No description
Pfam	PF00170	1.8E-6	51	92	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.3E-7	52	96	No hit	No description
PROSITE pattern	PS00036	0	54	69	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.1E-33	133	208	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MADASSRTDN STVVDNDGKI YRLEQGQSGG AIMASNSSDR SDRSDKPLDQ KTLRRLAQNR 60 EAARKSRLRK KSYVQQLESS KLKLAQLEQE LQKARQQGIF ISSSGDQTHA MSGNGAMTFD 120 LEYTRWLEDQ NKQINELRTA VNAHASDSDL RLIVDGIMAH YDEIFKVKGV AAKADVFHIL 180 SGMWKTPAER CFLWLGGFRP SELLKLLVNH LEPLTEQQML GLTNLQQSSQ QAEDALSQGM 240 EALQQSLAET LAGSLGSSAG SSGNVANYMG QMAMAMGKLG TLENFLRQAD NLRQQTLHQM 300 QRILTIRQAS RALLAIHDYF SRLRALSSLW LARPRE

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a negative role in rice basal defense responses to the bacterial blight pathogen Xanthomomas oryzae pv. oryzae (Xoo). May function in both positive and negative regulation of rice defense genes. Binds DNA in vitro (PubMed:16045470). Acts as transcriptional activator when bound to NPR1/NH1 in vitro (PubMed:22353606). Binds to the promoter sequence of CRK10 in vitro (PubMed:27176732). {ECO:0000269\|PubMed:16045470, ECO:0000269\|PubMed:22353606, ECO:0000269\|PubMed:27176732}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX424316	0.0	JX424316.1 Triticum monococcum TGA-type basic leucine zipper protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020189386.1	0.0	transcription factor TGA2.1
Refseq	XP_020189387.1	0.0	transcription factor TGA2.1
Swissprot	Q7X993	0.0	TGA21_ORYSJ; Transcription factor TGA2.1
TrEMBL	A0A3B6BZY0	0.0	A0A3B6BZY0_WHEAT; Uncharacterized protein
TrEMBL	A0A446LWG8	0.0	A0A446LWG8_TRITD; Uncharacterized protein
STRING	Traes_2BS_8D66D6B82.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP486	38	185

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12250.2	1e-139	TGACG motif-binding factor 6

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217] Chern M, et al. A rice transient assay system identifies a novel domain in NRR required for interaction with NH1/OsNPR1 and inhibition of NH1-mediated transcriptional activation. Plant Methods, 2012. 8(1): p. 6 [PMID:22353606] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709] Chern M, et al. A Genetic Screen Identifies a Requirement for Cysteine-Rich-Receptor-Like Kinases in Rice NH1 (OsNPR1)-Mediated Immunity. PLoS Genet., 2016. 12(5): p. e1006049 [PMID:27176732]