PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2BS_AF4D5351B.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

CAMTA

Protein Properties

Length: 99aa MW: 11874.5 Da PI: 10.3003

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2BS_AF4D5351B.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	149.4	8.9e-47	2	98	2	98
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 + ++rwlk++e++ iL n+e+ ++t+e++++p+sgsl+Lynr++ r+frkDGy w++kkdg+tv E+he+LKvg+v++l+cyYah+e+n Traes_2BS_AF4D5351B.1 2 KEARSRWLKPSEVYYILLNHEQLHITHEPPNKPPSGSLFLYNRRVNRFFRKDGYAWRRKKDGRTVGEAHERLKVGNVDALSCYYAHGEQN 91 3459************************************************************************************ PP CG-1 92 ptfqrrc 98 p fqrrc Traes_2BS_AF4D5351B.1 92 PYFQRRC 98 ****9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01076	4.8E-48	1	99	IPR005559	CG-1 DNA-binding domain
PROSITE profile	PS51437	65.142	1	99	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	2.1E-40	3	98	IPR005559	CG-1 DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 99 aa Download sequence Send to blast
LKEARSRWLK PSEVYYILLN HEQLHITHEP PNKPPSGSLF LYNRRVNRFF RKDGYAWRRK 60 KDGRTVGEAH ERLKVGNVDA LSCYYAHGEQ NPYFQRRCL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25627216, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:25627216}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK369350	1e-110	AK369350.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2089K17.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020147564.1	3e-62	calmodulin-binding transcription activator 4 isoform X1
Refseq	XP_024311654.1	3e-62	calmodulin-binding transcription activator 4 isoform X4
Swissprot	Q6NPP4	5e-43	CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBL	A0A453BV98	2e-65	A0A453BV98_AEGTS; Uncharacterized protein
STRING	EMT24284	3e-63	(Aegilops tauschii)
STRING	Traes_2BS_AF4D5351B.1	5e-69	(Triticum aestivum)
STRING	Traes_2DL_474B433DF.1	1e-63	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15485	8	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64220.2	2e-45	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]