PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BS_C270C0C9F.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 847aa    MW: 92372.6 Da    PI: 5.1843
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BS_C270C0C9F.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.5e-055072123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           ++C+ Cgk F r  nL+ H r H
  Traes_2BS_C270C0C9F.2 50 FVCEVCGKGFQRDQNLQLHRRGH 72
                           89******************988 PP
2zf-C2H215.45.1e-05129150223
                            EETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                             Cp Cgk++  + +Lk H +t+
  Traes_2BS_C270C0C9F.2 129 ACPRCGKRYAVQADLKAHAKTC 150
                            6******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.95E-84972No hitNo description
SMARTSM003550.0145072IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.6355072IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.9E-55072IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002805272IPR007087Zinc finger, C2H2
SMARTSM003558593123IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.0E-5116149IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.95E-8123148No hitNo description
PROSITE profilePS501578.663128156IPR007087Zinc finger, C2H2
SMARTSM0035590128148IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 847 aa     Download sequence    Send to blast
MPPNPTEPEQ PEAAATPAPP KKKRNLPGTP DPDAEVIALS PGTLMATNRF VCEVCGKGFQ  60
RDQNLQLHRR GHNLPWRLRQ RGPGAAPPRR RVYVCPEPGC VHHSPARALG DLTGIKKHFC  120
RKHGEKRWAC PRCGKRYAVQ ADLKAHAKTC GTREYRCDCG TLFTRRDSFV THRAFCGALV  180
EETGRVLAVP APPSPRPPDL EEVEENVDKD KEKEEENVDK HKEKEDEEDK GGEDENETSA  240
VAEVDEPQNV EAAMEEPQQQ RIPPSPSPTP TSPTPQEQQP MVAVVPNLDE PVVVVEPIVD  300
IKQEEEDKRD EDVCFQEADK YDGAELEDSN LPDNDTPMPP CFLPSPSDAI GTDGSSTSCG  360
TVSSASNSIA PATTTSTFAG LFASATTSTT PQSRSLRDLI GVDPTFLCLA IGTPSSLFPQ  420
TDASNPGTFA PPPAPHISAT ALLQKAAEAG ASQAGTSFLK EFGLASSSSS TPSRPPQGRF  480
IESSSMQSQQ PQGRFIESSS MQSRLPQDRF IDSSSTQSQL PKDRFIDSIS TQSRLPHDRF  540
IESSSTQSRL PQDRFIESSS TQSRLPQDRF VESSSTQSRL LQDRFIESSS TQSRLPQDRF  600
IESSSTQFRF PQDRYINNSM PSKLSQGRFM DTSLPSQQLL PQGRFFDNSP ASNLSQGRFF  660
DNSQPSNPPQ GWFFINSPSS NLPHGRFTDY SSPGRLPQGM YIDGLPQSRL PQGRYMDNSP  720
PAKLPPQGGR FVDSNQQQWH QRSNNHNQLM DMEPGPMVSG SLGLGLAYEG SNPRLPDLMM  780
GQSPLLGPKP ATLDFLGLGI GGTMGGSTAS GGLPALMVGG ELDMGSAAQP PSPWEEAQRK  840
TNGRTIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-29124186365Zinc finger protein JACKDAW
5b3h_F1e-29124186365Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3574170.0AK357417.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1052O01.
GenBankAK3621750.0AK362175.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2003A13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155452.10.0protein indeterminate-domain 1-like
TrEMBLA0A446M3P50.0A0A446M3P5_TRITD; Uncharacterized protein
STRINGTraes_2BS_13A816248.10.0(Triticum aestivum)
STRINGTraes_2BS_C270C0C9F.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118292836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-91C2H2 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]