PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BS_DD07C2EE6.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 220aa    MW: 22408.1 Da    PI: 9.1913
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BS_DD07C2EE6.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.001290112123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            y+C+ Cgk++ +   L  H  +H
  Traes_2BS_DD07C2EE6.2  90 YECSVCGKVYASYQALGGHKTSH 112
                            99********9999998887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.03490117IPR007087Zinc finger, C2H2
SMARTSM003550.0490112IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.42E-890161No hitNo description
PfamPF139125.2E-1390114IPR007087Zinc finger, C2H2
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
PfamPF139121.2E-10138163IPR007087Zinc finger, C2H2
PROSITE profilePS501579.349139161IPR007087Zinc finger, C2H2
SMARTSM003550.17139161IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280141161IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0042538Biological Processhyperosmotic salinity response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MSTDDVSRKS PVPPPSPPPM DSWARGGRRS RRRGGGGSGS ASSGGVAESE EEYLALSLLM  60
LSRGVRGEVE DGGIGGLKGV GAAPTKAQGY ECSVCGKVYA SYQALGGHKT SHRKPPTPPV  120
ASAGGEEASG GAPVEAKVHQ CSLCHRKFPS GQALGGHKRL HYEGGAATDG TGKDKEAAKA  180
KAAALLRDFD LNLPASGVAG DEAESPPPEA KRARLMLLAV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00118ampDAPTransfer from AT5G67450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153235.11e-100zinc finger protein AZF1-like
TrEMBLA0A3B6C3521e-153A0A3B6C352_WHEAT; Uncharacterized protein
TrEMBLA0A446M3841e-153A0A446M384_TRITD; Uncharacterized protein
STRINGTraes_2BS_DD07C2EE6.21e-154(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100282335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.16e-22salt tolerance zinc finger
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]