PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2BS_F3097F116.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

WRKY

Protein Properties

Length: 204aa MW: 22548.5 Da PI: 8.6567

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2BS_F3097F116.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	105.4	3e-33	111	169	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+ vv++tYeg+H+h+ Traes_2BS_F3097F116.1 111 LDDGYRWRKYGQKAVKNNNFPRSYYRCTHQGCNVKKQVQRLSRDEGVVVTTYEGTHTHP 169 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.9E-35	96	169	IPR003657	WRKY domain
SuperFamily	SSF118290	6.02E-30	103	170	IPR003657	WRKY domain
PROSITE profile	PS50811	30.113	106	171	IPR003657	WRKY domain
SMART	SM00774	1.1E-39	111	170	IPR003657	WRKY domain
Pfam	PF03106	3.0E-27	112	169	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000122	Biological Process	negative regulation of transcription from RNA polymerase II promoter
GO:0010055	Biological Process	atrichoblast differentiation
GO:0032107	Biological Process	regulation of response to nutrient levels
GO:0043620	Biological Process	regulation of DNA-templated transcription in response to stress
GO:0048527	Biological Process	lateral root development
GO:0005634	Cellular Component	nucleus
GO:0001046	Molecular Function	core promoter sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
ENYPIFFGTQ PSSSTSNPYH FVAGASSHDH LHHHGQAAGN NTGGGGLNQG LFLGSKQEEP 60 SESKDGGDDG AGSSSQGGGG EADVVVGKKK GEKRERRPRF AFQTRSQVDI LDDGYRWRKY 120 GQKAVKNNNF PRSYYRCTHQ GCNVKKQVQR LSRDEGVVVT TYEGTHTHPI EKSNDNFEHI 180 LTQMQVYSGI NNVSQTFGNQ HMFQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	3e-27	102	170	8	76	Probable WRKY transcription factor 4
2lex_A	3e-27	102	170	8	76	Probable WRKY transcription factor 4
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00506	DAP	Transfer from AT5G13080	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF368363	0.0	EF368363.1 Triticum aestivum WRKY transcription factor (WRKY72-b) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020165705.1	1e-124	probable WRKY transcription factor 75
TrEMBL	A0A3B6BWJ6	1e-150	A0A3B6BWJ6_WHEAT; Uncharacterized protein
TrEMBL	A0A446LQM8	1e-150	A0A446LQM8_TRITD; Uncharacterized protein
STRING	Traes_2BS_F3097F116.1	1e-151	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1100	38	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13080.1	9e-56	WRKY DNA-binding protein 75

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]