PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BS_FE9BD3DFC.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 128aa    MW: 13493.1 Da    PI: 10.3465
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BS_FE9BD3DFC.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.41.7e-1075102330
                            HHHHHHHHHHHHHHHHHHHHHHCTSCCC CS
                    HLH   3 rahnerErrRRdriNsafeeLrellPka 30 
                            r+h+e+ErrRR+riN  +++Lr+++P  
  Traes_2BS_FE9BD3DFC.1  75 RSHSEAERRRRERINAHLATLRSMVPCT 102
                            68************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.58E-967113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.44872128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-975110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-875102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MNSGPFSGAV GLYDGFYGGF GGGHGHEHGF GQHLGASTSS SVLLDGGXXX XAAAAADVPK  60
RKGGAREEKA ATALRSHSEA ERRRRERINA HLATLRSMVP CTGKMTSHGA YILRSEHTPI  120
ALSPRQHL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18085ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-148HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189852.13e-31transcription factor bHLH30-like
TrEMBLA0A077RR464e-33A0A077RR46_WHEAT; Uncharacterized protein
STRINGTraes_2BS_FE9BD3DFC.12e-83(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2099967
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]