PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2DL_036F2A3FC.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HB-other

Protein Properties

Length: 175aa MW: 19355 Da PI: 8.6853

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2DL_036F2A3FC.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.5	5.3e-19	27	79	5	57
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++t+ q++eL++lFe++++p++++r+ L k+++L+ +qVk+WFqNrR++ k+ Traes_2DL_036F2A3FC.1 27 ARHTPRQIQELQALFEQCPHPDEKQRAALGKRVRLQPSQVKFWFQNRRTQLKR 79 5789*********************************************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.9E-20	14	80	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.33E-18	14	80	IPR009057	Homeodomain-like
SMART	SM00389	1.6E-16	19	84	IPR001356	Homeobox domain
PROSITE profile	PS50071	16.633	20	80	IPR001356	Homeobox domain
CDD	cd00086	5.15E-17	20	81	No hit	No description
Pfam	PF00046	1.6E-16	27	79	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
GDAGGGEDDE VAPEPGRHGK RKRPPNARHT PRQIQELQAL FEQCPHPDEK QRAALGKRVR 60 LQPSQVKFWF QNRRTQLKRE SLMHENQLLM AENGKLRAEN LSLRVEMAHP VCGGCGGPVP 120 AMLDESPSLE EDLRVQNATL KNELSRLCAL ASAFLGRSIS FVAAPPTPGS PVERI

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020187432.1	1e-120	homeobox-leucine zipper protein ROC4-like
Swissprot	Q7Y0V9	4e-53	ROC4_ORYSJ; Homeobox-leucine zipper protein ROC4
TrEMBL	A0A453CLQ4	1e-120	A0A453CLQ4_AEGTS; Uncharacterized protein
STRING	Traes_2DL_036F2A3FC.1	1e-125	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14930	16	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61150.1	1e-38	homeodomain GLABROUS 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Wei J, et al. GL2-type homeobox gene Roc4 in rice promotes flowering time preferentially under long days by repressing Ghd7. Plant Sci., 2016. 252: p. 133-143 [PMID:27717449] Chou IT,Gasser CS Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins. Plant Mol. Biol., 1997. 35(6): p. 873-92 [PMID:9426607]