PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DL_03C96BECE.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 64aa    MW: 7246.14 Da    PI: 6.5055
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DL_03C96BECE.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.99.7e-132960132
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                           +g+WTt+Ed+ll+d v+q+G g+W+++++  g
  Traes_2DL_03C96BECE.1 29 KGPWTTQEDKLLLDHVAQHGEGRWNSVSKLTG 60
                           79**************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.2E-122361IPR009057Homeodomain-like
PROSITE profilePS5129413.5512464IPR017930Myb domain
SuperFamilySSF466892.21E-92660IPR009057Homeodomain-like
PfamPF002491.0E-102961IPR001005SANT/Myb domain
CDDcd001671.64E-63161No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 64 aa     Download sequence    Send to blast
LRECRAPLMA EAEGQLAACW GKQDDEWRKG PWTTQEDKLL LDHVAQHGEG RWNSVSKLTG  60
TARI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020160476.17e-30transcription factor MYB3-like
TrEMBLA0A453CEJ93e-30A0A453CEJ9_AEGTS; Uncharacterized protein
TrEMBLM8CHM08e-30M8CHM0_AEGTA; Myb-related protein 305
STRINGTraes_2DL_03C96BECE.14e-40(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5391822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13480.12e-14myb domain protein 79
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]