PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DL_0E9BE0271.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 82aa    MW: 9423.79 Da    PI: 7.5083
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DL_0E9BE0271.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.15.5e-1033562347
                           -HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47
                           +W+tIa ++  gRt++++k++w+++
  Traes_2DL_0E9BE0271.1 33 RWATIATHLK-GRTDNEIKNYWNTH 56
                           5********9.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-133273IPR009057Homeodomain-like
SuperFamilySSF466897.49E-93265IPR009057Homeodomain-like
PROSITE profilePS500906.3193357IPR017877Myb-like domain
PfamPF002492.1E-73356IPR001005SANT/Myb domain
CDDcd001672.10E-73357No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
PPCTVNFFTV GFCIVVSPEA TLTCMDNYLV DVRWATIATH LKGRTDNEIK NYWNTHIRKK  60
LLRMGVDPVT HQQLPPDQTN HD
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light, UV, cold, drought, ethylene, jasmonic acid (JA), salicylic acid (SA), abscisic acid (ABA), cadmium (CdCl(2)), high salt (NaCl), and cytokinins. {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:9839469}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4700907e-47AF470090.1 Zea mays P-type R2R3 Myb protein (Myb49) gene, complete cds.
GenBankBT0344847e-47BT034484.1 Zea mays full-length cDNA clone ZM_BFc0173K04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169245.13e-29myb-related protein Zm38-like
SwissprotO496084e-17MYB32_ARATH; Transcription factor MYB32
TrEMBLA0A453CWB18e-31A0A453CWB1_AEGTS; Uncharacterized protein
STRINGTraes_2DL_0E9BE0271.14e-56(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54230.15e-20myb domain protein 49
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  5. Lotkowska ME, et al.
    The Arabidopsis Transcription Factor MYB112 Promotes Anthocyanin Formation during Salinity and under High Light Stress.
    Plant Physiol., 2015. 169(3): p. 1862-80
    [PMID:26378103]
  6. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  7. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]