PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DL_1B1B2E505.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 208aa    MW: 22460.2 Da    PI: 8.3659
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DL_1B1B2E505.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM42.22.6e-1353796128
                    NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                            ++ ++g++ktLvfy+grap+g+ktdW++heyrl
  Traes_2DL_1B1B2E505.1   5 SRGVIGMRKTLVFYRGRAPNGRKTDWIIHEYRL 37 
                            56789**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.783158IPR003441NAC domain
SuperFamilySSF1019419.29E-17558IPR003441NAC domain
PfamPF023653.3E-5937IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MSSRSRGVIG MRKTLVFYRG RAPNGRKTDW IIHEYRLQTS EHAPTQEEGW VVCRAFQKPA  60
PNQKPSYIFP AYATTPGLGS YYDARPWLHS QVGGDLYYLQ SATGAAGPGG LGFPSQDVKY  120
SSEDLLDSKQ SLFGNIPQLI ESPPPTALLG CGDDAVLQPQ GPGHAVXRPP ATGSGTCGDR  180
HRLELPGQLA VHVTAPRILC HCCITSAP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184125.11e-119NAC domain-containing protein 30-like
TrEMBLA0A1D5UG651e-117A0A1D5UG65_WHEAT; Uncharacterized protein
TrEMBLA0A453DKU41e-117A0A453DKU4_AEGTS; Uncharacterized protein
TrEMBLM8D7K01e-117M8D7K0_AEGTA; Uncharacterized protein
STRINGTraes_2DL_1B1B2E505.11e-152(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25943791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71930.12e-31vascular related NAC-domain protein 7
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]