PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DL_25FD0FFB4.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 229aa    MW: 25443 Da    PI: 9.5164
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DL_25FD0FFB4.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.73.7e-151564148
                           TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT+eEd+ lv+++++ Gg+  +W+  ++  g++R++k+c++rw +yl
  Traes_2DL_25FD0FFB4.1 15 KGPWTEEEDKTLVEYIQKRGGNvgSWRGLPKATGLNRCGKSCRLRWTNYL 64
                           79**********************************************97 PP
2Myb_DNA-binding54.72.3e-1770114147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            rg++T +E+ l++++++ lG++ W+tIa ++  gRt++++k++w+++
  Traes_2DL_25FD0FFB4.1  70 RGNFTDDEERLIINLHASLGNK-WSTIATHLE-GRTDNEIKNYWNTH 114
                            89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.2661064IPR017930Myb domain
SuperFamilySSF466894.0E-2812111IPR009057Homeodomain-like
SMARTSM007176.6E-101466IPR001005SANT/Myb domain
PfamPF002491.5E-131564IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-221671IPR009057Homeodomain-like
CDDcd001671.07E-71764No hitNo description
PROSITE profilePS5129426.93865119IPR017930Myb domain
SMARTSM007171.7E-1569117IPR001005SANT/Myb domain
PfamPF002493.3E-1570114IPR001005SANT/Myb domain
CDDcd001677.05E-1272115No hitNo description
Gene3DG3DSA:1.10.10.602.2E-2672119IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MGRSPCCCQN SGVKKGPWTE EEDKTLVEYI QKRGGNVGSW RGLPKATGLN RCGKSCRLRW  60
TNYLRPDIKR GNFTDDEERL IINLHASLGN KWSTIATHLE GRTDNEIKNY WNTHIRKKLL  120
RMGVDPVTHK QLPPDQSRHH LNATSIAHHP EALLWAAAAA SLGSMDTGAL MLAQLVQQFL  180
QIIGSNNGTS GLIANLAAAN AMLNSRGSMV PNLQLQDQMN YLQLGYLCN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-271011922128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169243.11e-169transcription factor RAX1-like
SwissprotQ9S9Z22e-67MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A3B6DJ461e-170A0A3B6DJ46_WHEAT; Uncharacterized protein
STRINGTraes_2DL_25FD0FFB4.11e-171(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62652955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.21e-73myb domain protein 9
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]