PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DL_3C62DC707.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 57aa    MW: 6457.36 Da    PI: 10.6041
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DL_3C62DC707.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.82.1e-072753125
                           TSSS-HHHHHHHHHHHHHTTTT..-HH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..tWk 25
                           +g+WT+eEd+ lv+ +++ Gg+  +W+
  Traes_2DL_3C62DC707.1 27 KGPWTEEEDKTLVEHIQKRGGHvgSWR 53
                           79******************9988886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.01E-81754IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.9E-91853IPR009057Homeodomain-like
PROSITE profilePS5129411.6012257IPR017930Myb domain
PfamPF002491.3E-52753IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 57 aa     Download sequence    Send to blast
QRRSPSGRQR FVMGRSPCCC HDAGVKKGPW TEEEDKTLVE HIQKRGGHVG SWRGLPK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2432717e-46AK243271.1 Oryza sativa Japonica Group cDNA, clone: J100049K04, full insert sequence.
GenBankAL6629527e-46AL662952.6 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0009P12, complete sequence.
GenBankAL7315797e-46AL731579.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0006A01, complete sequence.
GenBankAP0149607e-46AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126127e-46CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8552357e-46CR855235.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0142I02-OSIGBa0101B20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169249.11e-27transcription factor MYB39-like
RefseqXP_020198492.11e-27transcription factor MYB39-like
TrEMBLA0A287JBK51e-27A0A287JBK5_HORVV; Uncharacterized protein
STRINGTraes_2DL_3C62DC707.17e-35(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62652955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.24e-16myb domain protein 9
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]