PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DL_46C827FAC1.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 128aa    MW: 14920.3 Da    PI: 9.6071
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DL_46C827FAC1.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH536.3e-172370555
                            HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                            hn  ErrRRd+iN+++  L+ellP++   ++   +K+++L ++++Y+ksLq
  Traes_2DL_46C827FAC1.2 23 HNFSERRRRDKINEKLKALQELLPNC---TKVHTDKVSMLDEVIDYLKSLQ 70
                            99************************...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.88E-201688IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.061869IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.31E-152374No hitNo description
Gene3DG3DSA:4.10.280.101.7E-192379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-142370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.6E-172475IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MEDGRALRRM SIPTRRSRSA DFHNFSERRR RDKINEKLKA LQELLPNCTK VHTDKVSMLD  60
EVIDYLKSLQ LQLQMLVMGK GMAHVVPPEL QQYMHYITTD PAAQLMQMPP SEPPQPFQIT  120
HANPPQRE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12631ERRRRD
22732RRRRDK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act as negative regulator of phyB-dependent light signal transduction. {ECO:0000269|PubMed:17485859}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by light in dark-grown etiolated seedlings. {ECO:0000269|PubMed:17485859}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2504581e-156AK250458.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf83b20, mRNA sequence.
GenBankAK2505721e-156AK250572.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf86m18, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020171332.15e-88transcription factor PIF1-like isoform X1
SwissprotQ0JNI93e-27PIL15_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15
TrEMBLA0A3B6DKI91e-86A0A3B6DKI9_WHEAT; Uncharacterized protein
TrEMBLA0A453CYX71e-86A0A453CYX7_AEGTS; Uncharacterized protein
TrEMBLM8CF531e-86M8CF53_AEGTA; Transcription factor PIF3
STRINGTraes_2DL_46C827FAC.21e-90(Triticum aestivum)
STRINGTraes_2DL_46C827FAC1.21e-90(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95623043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.23e-29phytochrome interacting factor 3
Publications ? help Back to Top
  1. Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T
    Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa.
    Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91
    [PMID:17485859]
  2. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]