PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DL_56ED5AE04.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 79aa    MW: 9265.98 Da    PI: 10.8648
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DL_56ED5AE04.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.55.6e-0729502648
                           HHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding 26 tIartmgkgRtlkqcksrwqkyl 48
                           +Iar ++ gR +kqc++rw+++l
  Traes_2DL_56ED5AE04.2 29 LIARSLP-GRIGKQCQERWHNHL 50
                           69*****.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.33E-72654IPR009057Homeodomain-like
CDDcd001671.02E-42950No hitNo description
Gene3DG3DSA:1.10.10.602.7E-92955IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
MSHGLFIVFL RTLMGWVCMQ RSKDQQNGLI ARSLPGRIGK QCQERWHNHL NPEYREMLGL  60
LRNMHKLMPI GYMGINGQK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ2364943e-55HQ236494.1 Triticum aestivum MYB3R transcription factor (MYB3R1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A446MKM72e-45A0A446MKM7_TRITD; Uncharacterized protein
STRINGTraes_2DL_56ED5AE04.23e-52(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.28e-13myb domain protein 3r-5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]